Author: Kuo Ping Chiu

Next-Generation Sequencing and Sequence Data Analysis

eBook: US $49 Special Offer (PDF + Printed Copy): US $131
Printed Copy: US $107
Library License: US $196
ISBN: 978-1-68108-093-2 (Print)
ISBN: 978-1-68108-092-5 (Online)
Year of Publication: 2015
DOI: 10.2174/97816810809251150101

Introduction

Nucleic acid sequencing techniques have enabled researchers to determine the exact order of base pairs - and by extension, the information present - in the genome of living organisms. Consequently, our understanding of this information and its link to genetic expression at molecular and cellular levels has lead to rapid advances in biology, genetics, biotechnology and medicine. Next-Generation Sequencing and Sequence Data Analysis is a brief primer on DNA sequencing techniques and methods used to analyze sequence data. Readers will learn about recent concepts and methods in genomics such as sequence library preparation, cluster generation for PCR technologies, PED sequencing, genome assembly, exome sequencing, transcriptomics and more.

This book serves as a textbook for students undertaking courses in bioinformatics and laboratory methods in applied biology. General readers interested in learning about DNA sequencing techniques may also benefit from the simple format of information presented in the book.

About the Author

- Pp. i
Kuo Ping Chiu
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Foreword

- Pp. ii
Miao-Lin (Merlin) Hu
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Preface

- Pp. iii-iv (2)
Kuo Ping Chiu
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Acknowledgements

- Pp. v
Kuo Ping Chiu
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The Ultimate Frontier of Knowledge: the Mysterious Genomes and the Gene Expression and Regulation in the Upstream of Biological Information Flow

- Pp. 4-16 (13)
Kuo Ping Chiu
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Evolution of DNA Sequencing Technologies

- Pp. 17-24 (8)
Kuo Ping Chiu
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Mechanisms of Next-Generation Sequencing (NGS)

- Pp. 25-37 (13)
Kuo Ping Chiu
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Genome Assembly, the Genomic Era and the Rise of the Omics Era

- Pp. 38-48 (11)
Kuo Ping Chiu
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Laboratory Setup and Fundamental Works

- Pp. 50-56 (7)
Kuo Ping Chiu
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Sequencing Libraries and Basic Procedure for Sequencing Library Construction

- Pp. 57-61 (5)
Kuo Ping Chiu
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Paired-End (PE), Mate Pair (MP) and Paired-End Ditag (PED) Sequencing

- Pp. 62-76 (15)
Kuo Ping Chiu
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Genome Sequencing and Assembly

- Pp. 77-83 (7)
Kuo Ping Chiu
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Exome Sequencing: Genome Sequencing Focusing on Exonic Regions

- Pp. 84-87 (4)
Kuo Ping Chiu
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Transcriptome Analysis

- Pp. 88-96 (9)
Kuo Ping Chiu
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Single Cell Sequencing (SCS) and Single Cell Transcriptome (SCT) Sequencing

- Pp. 97-104 (8)
Kuo Ping Chiu
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ChIP-TFBS Analysis

- Pp. 105-111 (7)
Kuo Ping Chiu
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ChIP-EM Libraries

- Pp. 112-116 (5)
Kuo Ping Chiu
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MicroRNA Analysis

- Pp. 117-120 (4)
Kuo Ping Chiu
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Application of NGS in the Study of Sequence Diversity in Immune Repertoire

- Pp. 121-126 (6)
Kuo Ping Chiu
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Galaxy Pipeline for Transcriptome Library Analysis

- Pp. 128-146 (19)
Kuo Ping Chiu
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Subject Index

- Pp. 147-148 (2)
Kuo Ping Chiu
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